Now putting it back on this is where it drives people nuts. It is easy if you know a thing or two. Here they are.
You need a 12 inch philips, not only do you set the carbs with it you well use it to get the boots back in place.
The trick is poke the boot through the hole, starting towards the center of the airbox or furthest point then work your way back around. Go in from here:

and from here:

They pop right in. The secret being the philips doesn't hang and it is long enough to get to where you need it. . Trying to pull them through is near hard or impossible, pushing them through with a circular motion is quick and easy. I tried the pull approach, takes forever and it just hard to do.
Now you have no excuse, go sync your carbs, I use a Carb Tune Pro. great tool.